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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtcttaaaaaaagacgaagctatcttgtgtttgttaaaatgcttgaaccaaagtgttgaatttgatgtttcttcttttag

Basic information

species Arabidopsis thaliana
transcript AT5G05940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtcttaaaaaaagacgaagctatcttgtgtttgttaaaatgcttgaaccaaagtgttgaatttga-tgtttcttcttttag---------------------------------------------------------------------------------
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || || || ||||| || ||||| || ||||| || ||||| || |||| |  ||       |  |   ||  | |  | |     |  |  ||||   ||| |||| | ||||  | | |   |  ||||                                                                                 
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcac-gatgtaattgag--aaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag

upper sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtcttaaaaaaagacgaagctatcttgtgtttgttaaaatgcttgaaccaaagtgttgaatttgat-gtttcttcttttag-------------------------------------------------------------------------------------
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || || || ||||| || || || || ||||| || |||||||| |||| |  ||  |    |   |  ||  | |  | |  |||   |  ||||   ||  |||| | || | | || | |  |   |                                                                                      
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatg-taattgag--aagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag

upper sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 2
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtctta-----------------aaaaaagacgaagctatcttgtgtttg--------ttaaaatgcttgaaccaaagtgttgaatttgatgtttcttcttttag-------------------------------
|| || |||||||| ||  | ||||| |||||||||||||| ||||| ||||| ||||| |  ||||| || ||||| || || || || ||||||||||||| |  ||                   | ||||  | | || | |   | |||        |||||||  |   |  |  ||||  | ||| |||||| |    | |                                
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag