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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACGTCTAAGAAGATGATCGGAGCCAGGAATTTCAAGGGTTTTGTTCTTACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaatttccttcttcttgtaaactcaatctcattgtatacatctatgattctgaattgtatctcgttagggtattctttgttgcttattggatttattttgtaaaaatctacatattggatgacagtttattgatccatttacttgtttacatggcttttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G05200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035079|gb|BP843919.2|BP843919
EST:     TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAA                         GCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
genomic: TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaat ... tttgatgcagGCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
EST: gi|125294055|gb|EL308140.1|EL308140
EST:     TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAA                         GCCAGATAGAGAAATTGCCCA
genomic: TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaat ... tttgatgcagGCCAGATAGAGAAATTGCCCA
EST: gi|152035496|gb|BP854753.2|BP854753
EST:     ACAGCCCAGCTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAA                         GCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
genomic: ACAGCCCAG-TATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaat ... tttgatgcagGCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
EST: gi|116393018|gb|EG435610.1|EG435610
EST:     TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAA                         GCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
genomic: TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaat ... tttgatgcagGCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
EST: gi|47832248|gb|CK121932.1|CK121932
EST:     TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAA                         GCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA
genomic: TACAGCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAgtacagaaat ... tttgatgcagGCCAGATAGAGAAATTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGA