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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttcatcaccacttcttgatcatatatataatatacccactctttgttcgaagagtgattgattcttggtgtgaaacttatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G05070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os12g03730.1 (Oryza sativa), 5'ss of exon 3
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttcatcaccacttct-tgatca-tatatataatatacccactctttgttcgaagagtg-attgattcttggtgtgaaacttatgcag-----
    || || ||||| ||| | |||||||||||||||||||||||||| ||| ||   ||||||||||| ||||||||||| || || |||||||  |  |||| |     ||||    | |  | |||| ||||   |  |  |  | ||  ||| |       | | |  || ||    |     || |  |      
AAGGTACCGCCCACCACGATCCTCACATTGCTCCATCTGCAACAACTGCGTCGAAAAGTTTGATCACCACTGTCCATGGGTCGGCCAATGCATTGGACTTgtaagtaaacaatcaatgatgcagtaatcagtatagtcatcagcctaattcaatgtgcagttccagtactatttgtttccatagtgtttttagaaatatg

upper sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttcatcaccacttct-tgatca-tatatataatatacccactctttgttcgaagagtgattgattcttggtgtgaaact-tatgcag-----
    || || ||||| ||| | |||||||||||||||||||||||||| ||  ||   ||||||||||| || |||||||| || ||||||||||  |  |||| |     ||||    | |    |||| ||||   |  |  |  |   |   |  | ||    | |  |  ||| |   | | | | |  ||     
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttccagtactatttgtttccatagtgtttttaggcatc

upper sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G005834_T01 (Zea mays), 5'ss of exon 3
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttcatc-accacttcttgatcatatatataatatacccactctttg--ttcgaagagtgattgattcttggtgtgaaacttatgcag-----
|   || ||||| || ||| | || || |||||||||||||||||||| |||||    ||||| ||||| || |||||||| || ||||||||||  |  |||| |     | | | |   | |  |  |   |  |   ||    | |  |    ||| |               ||       ||   ||||      
GAGGTACCGTCCGCCACGATCCTCGCACTGCTCCATCTGCAACAACTGCGTCCACAAGTTTGACCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaccgacccagctactatgcagtacgcaatttgaatgttgaattatcagattctagctccagacctccactgaaaaaggacacgtgcaagtcag

upper sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G30380.1 (Glycine max), 5'ss of exon 2
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaat------tcttcatcaccacttcttgatcatatatataatatacccactctttgttcgaagagt--gattgattcttggtgtgaaacttatgcag
| | ||||||||||| || || || ||||||||||| ||||| || ||||| ||    |||||||| |||||||| ||||||||||| || ||||    ||||| |      | ||| | |  | |   | ||    | ||   | ||   ||| || |||  ||   |   ||    ||    | | |||   ||  | 
GTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCAgtaagtataagttattcttaattattatattatagagtttaatttgtatggacttttagtttaaattttttaatgttatcaaaatttcaaatcaatataa

upper sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g00370.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttc----atcaccacttcttgatcatatatataat--------atacccactctttgttcgaagagtgattg--attcttggtgtgaaacttatgcag----------------------------------------------------------------------------------
| | |||||||| || || || || || ||||| ||||||||||||||||| ||    ||||||||||| ||||| |||||||| ||||| ||||| |  ||||  | |||    |   |    || | | |||  ||  |          || |||  | ||| |   |    |   ||   ||  || |   |||   | || |                                                                                  
GATATATCGTCCTCCCCGTGCTTCTCACTGCTCAATCTGCAACAACTGTGTGCAGAAGTTTGATCACCACTGTCCTTGGGTTGGCCAGTGTATTGCTCTGgtaagcttttcccacaaagctttgtcctaaacattaatggagctttcattaatcccccgtatttatataagattttcatgttgtttatgataccaaatcaaggctggtttcttttaatcacccttttttctgatctaaacatttaggtatattcaataaatgactttgtttcttgcttttggttgcag