1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCGAAAAGCTCCAGTTACCACCCCACCTCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaatttacaccctttattattgtgtttgctcaatttaatgccctttgttgtcacaaacttgctaatatgaataaacctttttattatctatctatggtttatgtgtttgataatctggttttcctttctgggttatag
species | Arabidopsis thaliana |
transcript | AT5G04600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAG CTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAEST: gi|86067156|gb|DR362913.1|DR362913
genomic: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaattt ... tgggttatagCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACA
EST: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAG CTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACAEST: gi|86074844|gb|DR370601.1|DR370601
genomic: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaattt ... tgggttatagCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACA
EST: ACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAHG CTTTCTTCTCGCAGTTTGGWACAGTTAAGAGAGTTAGAGTCGCCAGAWACAEST: gi|86067154|gb|DR362911.1|DR362911
genomic: ACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaattt ... tgggttatagCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACA
EST: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAG CTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACA
genomic: GCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaattt ... tgggttatagCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGAAAAGCTCCAGTTACCACCCCACCTCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGACTGAGATTGAAGgtataaatttacaccctttattattgtgtttgctcaatttaatgccctttgttgtcacaaacttgctaatatgaataaacctttttattatctatctatggtttatgtgtttgataatctggttttcctttctgggttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG