1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGTTACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCTCATTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttgttttaagtctattgatcgaatatttcaggttagttcttctaataaatgattctaatgatggttttgttttctcctgacgcatataatag
species | Arabidopsis thaliana |
transcript | AT5G03290.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAG GTTGTTAGAGGTGGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAGEST: gi|125258866|gb|EL272951.1|EL272951
genomic: TTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttg ... catataatagGTTGTTAGAGGTG-TGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAG
EST: CCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAG GTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTEST: gi|124817140|gb|EH902006.1|EH902006
genomic: CCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttg ... catataatagGTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGT
EST: CCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAG GTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAGTEST: gi|124770114|gb|EH860244.1|EH860244
genomic: CCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttg ... catataatagGTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAGT
EST: ACGGAAGGAGAATACAGTGGCCTTGAACATCAG GTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGEST: gi|86073175|gb|DR368932.1|DR368932
genomic: ACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttg ... catataatagGTTGTTAGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGG
EST: TTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAG NNTGTTAGAAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAG
genomic: TTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttg ... catataatagGTTGTTAGA-GGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCTCATTACCATCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGgtttagtttgttttaagtctattgatcgaatatttcaggttagttcttctaataaatgattctaatgatggttttgttttctcctgacgcatataatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA