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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAATGTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGgtatagtgttcatcatacttaaaattagctcatataaaaaaaaaattgaacttcttttgaaatggtttgtgtatttctgtttggcag

Basic information

species Arabidopsis thaliana
transcript AT5G03200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03200.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g02970.t01 (Vitis vinifera), 5'ss of exon 3
TGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAATGTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGgtata-----gtgttcatcatacttaaaattagctcatataaaaaaaaaattgaacttcttttgaaatggtttgtgtatttct-gtttggcag-------
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TTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgtatataataattctatttcttcctttattttctccctgtctgctaatttttttttctcttctgtgttgactggaaaaggagtcaataggcagtcattcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797286|gb|AU229188.1|AU229188
EST:     TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATG                         TGTATGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGC
genomic: TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGgtatagtgtt ... tgtttggcagTGTATGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGC
EST: gi|86082853|gb|DR378612.1|DR378612
EST:     TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATG                         TGTATGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGC
genomic: TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGgtatagtgtt ... tgtttggcagTGTATGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGC