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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCTTCATGTGAGAACCATTAGAGTTCTGCTTGTCGAAAATGACGACTGCACTCGTTATATCGTTACTGCACTTCTTCGCAATTGTAGCTATGAAGgtcagttttgaagcctatggcccaactttaatctatagcgcatatatgtacccgtttcggttctgtttgttgattgattattattaactctgtcatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G02810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 1
AGGTTTCTTCATGTGAGAACCATTAGAGTTCTGCTTGTCGAAAATGACGACTGCACTCGTTATATCGTTACTGCACTTCTTCGCAATTGTAGCTATGAAGgtcagttttgaa--gcctatggcccaactttaatctatagcgcatatatgtacccgtttcggttctgtttgttgattgattattattaactctgtcatggcag-----
|||||| | ||| | ||| || |||  ||  ||||||| || | ||| ||||  || ||| || | || |||||||| |||||||||||||| ||||||||| |||| | |   |  |||     || |   || |||      | | ||     || | |   |||    || |   | || | ||  |  |||||           
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttcttatccgtttataatggaatt---atttatt-----tgtttggttaggtctggacactgaccttttaacaactactgtttgcattgtcaaattttatgtt

upper sequence: AT5G02810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G19870.1 (Glycine max), 5'ss of exon 1
AGGTTTCTTCATGTGAGAACCATTAGAGTTCTGCTTGTCGAAAATGACGACTGCACTCGTTATATCGTTACTGCACTTCTTCGCAATTGTAGCTATGAAGgtcagttttgaagcctatggcccaactttaatctatagcgcatatatgtacccgtttcggttctgtttgttgattgattattattaactctgtcatggcag-----
|||||| | ||| | ||| || |||  ||  ||||||| ||  |||| ||||  || ||| || | || |||||||| |||||||||||||| ||||||||| |||| | |    | ||     | |  |||   | |    | |   ||    ||| |   | |    || | | | || | ||  |  |||||           
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttatta----tctgtttataatggaattccttgtttgtctggttag--atttggacaccgaccttttaataactactgtttgcattgtcagattttatgtt