1 5' 3' | 2 5' 3' | 3 5' 3' |
AGACCGATCTTCAGAATCAGTTGAAGGAATTCAAGGCTGAACTCGCTCTCCTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttttatatatctacttatacgtatatatgaaatgtgtgtatatatatcctcatttgttaggatttagtgttactttccaatttggagacattt...
species | Arabidopsis thaliana |
transcript | AT5G02610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTEST: gi|116437117|gb|EG479709.1|EG479709
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGT
EST: TCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|164077444|gb|ES015348.1|ES015348
genomic: TCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCEST: gi|86026238|gb|DR321991.1|DR321991
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATC
EST: CTCCGTGTCGCTAAAGTCACCGGARGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026240|gb|DR321993.1|DR321993
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026246|gb|DR321999.1|DR321999
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGA-GCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|116458642|gb|EG501234.1|EG501234
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|86026245|gb|DR321998.1|DR321998
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGA-GCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026239|gb|DR321992.1|DR321992
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAG-CGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026249|gb|DR322002.1|DR322002
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTNAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|125027324|gb|EL099593.1|EL099593
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: AACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|86026244|gb|DR321997.1|DR321997
genomic: AACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTNAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|116467333|gb|EG509925.1|EG509925
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CGGAGGCGCTCCCAACAAGCTTTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|86026250|gb|DR322003.1|DR322003
genomic: CGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGA-GCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|116467337|gb|EG509929.1|EG509929
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|86026247|gb|DR322000.1|DR322000
genomic: CGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026241|gb|DR321994.1|DR321994
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAG-CGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|116434671|gb|EG477263.1|EG477263
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|116437094|gb|EG479686.1|EG479686
genomic: CGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: TCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAEST: gi|86026248|gb|DR322001.1|DR322001
genomic: TCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGA-GCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026243|gb|DR321996.1|DR321996
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAAEST: gi|86026242|gb|DR321995.1|DR321995
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
EST: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT CAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCTCAGAA
genomic: CTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttt ... tgatatccagCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCGATCTTCAGAATCAGTTGAAGGAATTCAAGGCTGAACTCGCTCTCCTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATgtatgtcttttatatatctacttatacgtatatatgaaatgtgtgtatatatatcctcatttgttaggatttagtgttactttccaatttggagacattt
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