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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGATAGAAGAATGTATAGTATTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatattatagatagatatatggtagtatggtacaatagtaatttatgaaagataagggttggagaattgattaaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G02580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G35810.1 (Glycine max), 5'ss of exon 2
CATTTGATAGAAGAATGTATAGTATTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatattatagatagatatatggtagtatggtacaatagtaatttatgaaagataagggttggagaattgattaaatttgcag----------------
| | ||||||| || |||||  ||||||||||| ||||||||||||| ||||| ||||| | ||| ||||| ||||| |||||| | || || ||||| ||||     ||| |   ||  |  |   |  | | |  || | | ||   || |   || |   ||      || | |    ||                    
CGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCTGTTATTACCTCCACCGgtaaggtcatt-tgattaatttcactctccttttgctca-tggaaaaaaataattaattaat-ttaattcgttcactgttattatgaccactttagcttcgct

upper sequence: AT5G02580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G33110.1 (Glycine max), 5'ss of exon 2
CATTTGATAGAAGAATGTATAGTATTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatattatagatagatatatggtagtatggtacaatagtaatttatgaaagataagggttggagaattgattaaatttgcag-------------
| | ||||||| || |||||  ||||||||||| ||||||||||||| ||||| ||||| | ||| ||||| ||||| |||||  | || || ||||| |||| |   |||  |  | | | |    | |      | ||    ||||||  ||  ||      |      |  | |    ||                 
CGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCTCCACCGgtaaagtcatttgatttcgctctccttttgctcatgaaaaataaaatttaaaaattatttaatataattcgtccactgttattatgaccactttagcttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86029377|gb|DR325130.1|DR325130
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGT-GAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86029380|gb|DR325133.1|DR325133
EST:     GGATGCTCTGTTCAAGCATACTAATATTAAGCCTATCATCACTTCCACAG                         TGTG-AAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86029379|gb|DR325132.1|DR325132
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGTG-AAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86076807|gb|DR372564.1|DR372564
EST:     GGATGCTCTGTTCAAGCATACTAATATTAAGCCTATCATCACTTCCACAG                         TGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86029378|gb|DR325131.1|DR325131
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGTG-AAAGAGCTAGCGAAAGAGAACAAAGAGTWMTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|19874569|gb|AU235400.1|AU235400
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86029381|gb|DR325134.1|DR325134
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
EST: gi|86029382|gb|DR325135.1|DR325135
EST:     GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAG                         TGTG-AAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA
genomic: GGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTTCCACAGgtacacatat ... aaatttgcagTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCATACGAGA