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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCAAAGATATGATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTGGTTGTTTTTATCCGCCAGCATTTGCAGGgtactatttcatatctctctctctcgtgtcttttctgatgatttcctcctgctatttgacttttcctcctgctatctctctctcag

Basic information

species Arabidopsis thaliana
transcript AT5G01960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 1
-TACCAAAGATATGATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTGGTTGTTTTTATCCGCCAGCATTTGCAGGgtac-----tatttcatatctctctctctcgtgtcttttctgatgatttcctcctgctatttgacttttcctcctgctatctctctctcag
 ||||| |||||||| |||||||| || ||  | |||||||||||  || | || ||||| |||||||||||||| ||||| ||  | ||||||||||| ||| |     || ||  ||| | |     |  |||  | || ||  ||||  |  |  |||||||  ||      |  |      |      
TTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAggtgcgctcttagtttttatgttttgagttactgttctatccgagaatttatttat-ttatttgatgttgttgggtattgcaatgca-----

upper sequence: AT5G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 1
TACCAAAGATATGATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTGGTTGTTTTTATCCGCCAGCATTTGCAGGgtactatttcatatctctctc--tctcgtgtcttttctgatgatttcc----tcctgctatttgacttttcctcct-gctatctctctctcag-------
|| || ||||| |||||||||||||||||  | |||||||||||  | ||||| ||  ||||||| |||||||| ||||| ||||| || |||||||| |||| |||| | ||| | | ||  | | |      || | |  || |      |  ||||||  ||      |  || | |||   ||| | |        
TATCAGAGATACGATATTCAGCAGGCTGCCAGGTGGATTGAGCAGGTGCTTCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattccttatttatttcaatgtagcagtagtttttagcatctataaatttgtgctatgcgaaagcaacaactagttatggttctttgattttgaca