Sequence
atgc intronic sequence ATGC exonic sequenceATCCCAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACCTTCTGGCTTTAGgtatggcgatgatatcttcgcttccttcagggctgctactaccggaggagaagcctccattccttctaggaaatctgctcctattgagagacaattgcct...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G01390.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124759482|gb|EH849612.1|EH849612EST: CTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACCTTCTGGCTTTAG GAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTG
genomic: CTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACCTTCTGGCTTTAGgtatggcgat ... tttaatgcagGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCCCAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACCTTCTGGCTTTAGgtatggcgatgatatcttcgcttccttcagggctgctactaccggaggagaagcctccattccttctaggaaatctgctcctattgagagacaattgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgcttcc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagacaa