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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGTATCCGGCTACAAAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttcttttactatctcattcttcaacttaagtatcttttcagtcagctcataagtaactgtttccagaattagaattacttgacaagtgttaactgttcctttttttttttttttaataacttttttgcttcatag

Basic information

species Arabidopsis thaliana
transcript AT5G01220.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01220.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 2
CTATGTATCCGGCTACAAAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttcttttactatctcattcttcaacttaagtatcttttcagtcagctcataagtaactgtttccagaattagaattacttgacaagtgttaactgttcctttttttttttttttaataacttttttgcttcatag
 ||||| || || ||||||||| | ||||||||||| || | |||||| |||||||||||||| |||||  |||  | ||||   || |  ||| |  ||   ||    |   |    |      |||   ||           || |   ||   ||  |||  ||| | |  | |                              
ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAGgtaactttatctactccttc-tgattctatatacacatgccctgtatttttttccccttaaaccttgt--------aaactgactggttagctttatttgtccatggtatag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409173|gb|EG451765.1|EG451765
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: gi|124951935|gb|EL027254.1|EL027254
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAA
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAA
EST: gi|86057508|gb|DR353265.1|DR353265
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: gi|116409166|gb|EG451758.1|EG451758
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: gi|116409154|gb|EG451746.1|EG451746
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: gi|116409155|gb|EG451747.1|EG451747
EST:     AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG                         GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC