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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCATTAGACATTGCATCATGGCTATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGgtgagtttttcttcttttatcacaaactcttcccttgaaatattagtcaacggggttgacttgtttcaactcactactaaaactgatttaagatctgtttcttaatgtgatacag

Basic information

species Arabidopsis thaliana
transcript AT4G39390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39390.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
GCGGCATTAGACATTGCATCATGGCTATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGgtgagtttttcttcttttatcacaaactcttcccttgaaatattagtcaacggggttgactt--gtttcaactcactactaaaactgatttaagatctgtttc----ttaatgtgatacag--------------------------------------------------------------------
|| ||| |||||  ||   ||||| | |||||||| || || |||||||| |||||| | || |||||||| |||||||| ||  |||| |||||||||||| ||    |   |     |      || |  ||  | |  | ||     |    || ||    || |    |     |||||||| |  || ||| |   |       | | | ||  |                                                                     
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag

upper sequence: AT4G39390.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 2
GCGGCATTAGACATTGCATCATGGCTATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGgtgagtttttctt--cttttatcacaaactcttcccttgaaatattagtcaacggggttgacttgtttcaactcactactaaaactgatttaagatctgtttcttaatgtgatacag
||  |  | ||   |||  ||||| | |||||||| || ||||| |||||||||||  | || |||||||| ||||||||||| ||||| || ||||| |||  ||   || |  || | | | || || |||   |  |  ||| || |        | |||  |   |    | | |||||     | |    | ||  | |             
GCAACTGTTGATGCTGCCGCATGGATGTTCAATGTTGTCACTTCGGTTGGAATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtccctcatgactatcaacccacacgctttaatcaatttatcagcctttata--ttactcatacga---tagttctaaatgcattgtgtcttatgcatttc------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124882083|gb|EH960985.1|EH960985
EST:     CGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCG                         CTACTACATTAACCGGTTTGCATTTCGGAACAACGACATTGTTGACAACTT
genomic: CGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGgtgagttttt ... tgtgatacagCTACTACATTAACCGGTTTGCATTTCGGAACAACGACATTGTTGACAACTT