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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCACCAAAATGAAAGCAGAGGCGAAGAAGAAGGAAGTTGAGAGAATGTCAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTgtaagtaaccctgaaaacatggcgtatttactctctattcttttgagtttgaagatcattcaatcttttggttattgtag

Basic information

species Arabidopsis thaliana
transcript AT4G39040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087289|gb|DR383048.1|DR383048
EST:     CAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTT                         AGAAGAGAATATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT
genomic: CAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTgtaagtaacc ... gttattgtagAGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT
EST: gi|19799388|gb|AU230678.1|AU230678
EST:     CAATTACTAGAAGGCAGAAATACCCAAACACTAGACCCACTAAACCCTTT                         AGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGGCGGAAG
genomic: CAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTgtaagtaacc ... gttattgtagAGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGG-CGGAAG
EST: gi|124890081|gb|EH968983.1|EH968983
EST:     GACCCACTAAACCCTTT                         AGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT
genomic: GACCCACTAAACCCTTTgtaagtaacc ... gttattgtagAGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT
EST: gi|86078561|gb|DR374318.1|DR374318
EST:     CAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTT                         AGAAGAGAATATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT
genomic: CAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTgtaagtaacc ... gttattgtagAGAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGT