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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctcttttatgctacacttactcgtgtatctaatgcacatgttacttggcttcttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G38600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G374574_T02 (Zea mays), 5'ss of exon 3
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctcttttatgctacactta-ctcgtgtatctaatgcacatg-ttacttggcttcttgtag------------------
 || || ||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| || |||||||| || |||||||||||||| |||||||| ||      ||| |  |||| ||    |    |||| || ||| |     ||||  |  ||||    ||||   | |                  
CCTTAAGAAGATCTCTCTGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCCCTAATGGCTGTTCTATCGTATCTCGACTTCTTCTCCACTGGGGTTCAGgtcgg--gtcctctga--tctccttacaaccgttcttatcttgtgcactgtttgcatctacttacacctcttcccatgggggacgtacttgttgtag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G049141_T02 (Zea mays), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttct-----cttttatgctacac--ttactcgtgtatct-aatgcacatgttacttggcttcttgtag-----------------------------------------------------------------------------------------------------
||| ||||| ||||| | |||||| |||||||| || |||||||||||||| || ||||| || || || || || || || |||||||| |||||||||||   | | | |||  ||  |     |||||     |||   |   | || | | | |   ||  | |  | | |||| || |                                                                                                       
TCTTAAAAAAATATCCCTGGAGCATCCAACTGCGTGCTTGCGAGCTGGTGCACTAATGGCAGTCCTATCATACCTTGACTTTTTCTCCACAGGTGTTCAGgtaa-tcactctctgcctattatagacttttgcatcacaaaatactttgtttgtttcagctcatttatctcatagcttattcttatgcattacttgtcattatattgtgacagatgaactgtattatttattcttgttatttatttttattactaactgttgtttttgttgatggaatgttttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctctttt----atgctacacttactcgtgtatctaatgcacatg-ttacttggcttcttgtag----------------
 || || ||||| |||||||||||||||||||||||| | |||||||| ||||| |||||||| || || ||  |||| |||||||| || || ||||||||   | |      || | ||  | |      |  |   ||  |  || || |    | | || ||     || | |  |                  
ACTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCGACAGGAGTTCAGgtaactcatcaatgaaatcctaatatcaaagggtgatgattcattttgcatttgccacccttgattggcaagcctatattgacacaatcatgtttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgg-------gtaaatttctaacttctcttttatg-ctaca-cttactcgtgtatcta---atgcacatgttacttggcttcttgtag------------------------------------------
||| || ||||||||||||||||| || ||||||||  | ||||| |||||||||||||| ||||| || ||| |||| ||||| || || || ||||||||         || || | |  || | |     |||  | || |  ||| ||   | |    |  || |  | | |||||  |  ||                                            
TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcataaatcatttggccacaggtgccattagtgagcaagtgtatgttgacattattctttgtttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G00530.1 (Glycine max), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctctttt----atgctacacttactcgtgtatctaatgcacatg-ttacttggcttcttgtag------------------
 || || ||||| |||||||||||||||||||||||| |  ||||||| ||||| |||||||| || || ||  |||| |||||||| || || ||||||||   |||      || | ||    |      |  ||| ||  |  ||  | ||   | | || |||    || | |  |                    
ACTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTAGAGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGgtaactaatcaatgaaatcctaacatcaaagggtgacaattcattttgcgtttaccacccttgattagcaagcctatattgacataatcatgtgtttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggt--------aaatttctaacttct-----cttttatgctacacttactcgtgtatctaatgcacatgttacttggcttcttgtag----------------------------------------------
| | || ||||| |||| |||||| || ||||||||  | ||||| |||||||||||||| ||||| || ||| |||| ||||| || || || ||||||||   |        || |  |||| ||          ||||  || | |    | | |   || | || |  | | |||||  |   |                                                
TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattata-tggtccttttggatagt-cataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctcttttatgctacacttactcgtgtatctaatgcacatgttacttggcttcttgtag----------------------
||| || |||||||| |||||||| || ||||||||||||||||| |||||||| ||||| ||||| || | ||| || |||||| | || |||||||||||    || |||     ||  ||  ||||||   ||   | || | |||   || ||| ||       ||  || ||                      
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaa--aattttggctatttactcgtatgctgtgctccttggtct-tctggggc-catattggg-atttttctgaagaagtttatttccatgttttcag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 5'ss of exon 2
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggt--------aaatttct------aacttctcttttatgctacacttactcgtgtat-ctaatgcac--atgttacttggcttcttgtag----------------------------------------
||| || |||||||||||||| |||||||||||||| ||||||||||| || || ||||| ||||| || |||||||||||||||||||| || || |||||   |        |||||| |      |  |||| ||| |   |    ||  |  || |  || | | |   ||  |  ||    | |||| |                                        
TCTTAAGAAGATATCTCAGGAACACCCAACTGCCTGCTTGCGAGCTGGAGCACTCATGGCAGTGCTTTCATATCTGGATTTCTTCTCCACGGGGGTCCAGgtaaatcgccattaaaatttgtgtgtgtatattctttttaacctttttgttgattatgcacgctgagggaagaatactgttttatattttgtggggtcatcaagtaatttatctccttttactatttgtttcag