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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAACCCCGACGCAGCCAATTTCCAAAGAGAAGGCCAATCCATATTTCGGGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATgtaagattatccggacccgaaaacgatatgacaacgtaaccattatcgtgttaaacgtttgttacttataagtttgttttgtcttaaatatttttag

Basic information

species Arabidopsis thaliana
transcript AT4G37770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s1437g00010.t01 (Vitis vinifera), 5'ss of exon 2
TAAGAACCCCGACGCAGCCAATTTCCAAAGAGAAGGCCAATCCATATTTCGGGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATgtaagattatccggacccgaaaacgatatgacaacgtaaccattatcgtgttaaacgtttgttacttataagtttgttt---tgtcttaaatatttttag---
  | ||||| || |||||    ||| |  |||| ||  |||| |||||  | ||  |||||||||| ||||||||||||||||||||| | |||||||| |||||   ||||||   |  | |  |||  |  ||  | ||||| | |  ||  | ||  || | | |||     || |   ||| ||  |||||  | |   
ACAAAACCCAGATGCAGCTGGGTTCAAGCGAGATGGAGAATCGATATTCAGAGAGCTAGCTCTCTTCCAAGATTATCATGGCCTTCCTGCTTTCAAGAAGgtaag--catccggctacttatattataaaattacaaagccattctggctttccaagtgagtaattaatatcaaagtctaaatgtatttgatattgattgcag

upper sequence: AT4G37770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 2
TAAGAACCCCGACGCAGCCAATTTCCAAAGAGAAGGCCAATCCATATTTCGGGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATgtaagattatccggacccgaaaacgatatgacaacgtaaccattatcgtgttaaacgtttgttacttataagtttgttttgtcttaaatatttttag------
  | ||||| || |||||    ||| |  |||| ||  |||| |||||  | ||  |||||||||| ||||||||||||||||||||| | |||||||| |||||   ||||||   |  | |  |||  |  ||  |  |||| | |  ||  | ||  || | | |||     || |    |||  |  | ||        
ACAAAACCCAGATGCAGCTGGGTTCAAGCGAGATGGAGAATCGATATTCAGAGAGCTAGCTCTCTTCCAAGATTATCATGGCCTTCCTGCTTTCAAGAAGgtaag--catccggctacttatattataaaattacaaagacattctggctttccaagtgagtaattaatatcaaagtctaaatttatttgatattgattgcag