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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattgtttcattatttgatcattcgaaaacaatggttatgttggccaacatttttttttttaaaaggaattttatctattgagtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G37445.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053793|gb|DR349550.1|DR349550
EST:     GCTATCAACAACTTCGACGATTTTCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|19800029|gb|AU231319.1|AU231319
EST:     TTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGCCAGGCACTTCGATTTCCCAAGCCCCGG
genomic: TTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAA-CCCCGG
EST: gi|86053796|gb|DR349553.1|DR349553
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|86053794|gb|DR349551.1|DR349551
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCANGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|86053795|gb|DR349552.1|DR349552
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|19879124|gb|AU239955.1|AU239955
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattgtttcattatttgatcattcgaaaacaatggttatgttggccaacatttttttttttaaaaggaattttatctattgagtgcag

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