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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGTAATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTTgtatcctctttctattttattaaagcttaggatcaattcttagtaaaaaagtttgctttttgttgcattggtttgatttcgtgtcttgtaaagctgcttcctttaacttggtttgatcag

Basic information

species Arabidopsis thaliana
transcript AT4G36440.1
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053041|gb|DR348798.1|DR348798
EST:     CTRATTCTAATTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTT                         AGCAGCTGGATCGGTCATCCATTTGAATATGATGGCAAG
genomic: CTGATTCTAATTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTTgtatcctctt ... gtttgatcagAGCAGCTGGATCGGTCATCCATTTGAATATGATGGCAAG
EST: gi|124820562|gb|EH905428.1|EH905428
EST:     CTGATTCTAACTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTT                         AGCAGCTGGATC
genomic: CTGATTCTAATTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTTgtatcctctt ... gtttgatcagAGCAGCTGGATC