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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatcattttattgtctttccttcgaatattgataatcggtgatgtaatgttgaattgttggtgtaaacag

Basic information

species Arabidopsis thaliana
transcript AT4G36410.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046991|gb|DR342746.1|DR342746
EST:     ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|86046992|gb|DR342747.1|DR342747
EST:     ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|86046995|gb|DR342750.1|DR342750
EST:     ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|86081006|gb|DR376763.1|DR376763
EST:     ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|86046993|gb|DR342748.1|DR342748
EST:     ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|124892520|gb|EH971422.1|EH971422
EST:     CTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: CTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: gi|86046996|gb|DR342751.1|DR342751
EST:     AATCCTCCTTCTGGTNTTCAAGGCCACAGAGTCTCTGATAATCTCCAACG                         ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: AATCCTCCTTCTGGT-TTCAA-G-CACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC