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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGgtaaaaacgctatctcgtatcggtgaatcttccttttgacactgatattattgtctgagaatgtgactgcagtgtaatgttttttttttttggtccattgaag

Basic information

species Arabidopsis thaliana
transcript AT4G35640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35640.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G22630.1 (Glycine max), 5'ss of exon 3
CCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGgtaaaa-acgctatctc-gtatcgg--tgaatcttccttttgacactgatattattgtctgagaatgtgactgc-----agtgtaatgttttttttttttggtccattgaag------
||||||||||||  | |||||||||||||| |||||||||||||  || || |||   ||||| | |||||| ||    || |||||  | ||| |||||||||   | ||  | |  |||| ||  |    | |  | || |  ||  |  ||  || ||  | |  || |       | | |||| |  ||  |||| |  | |||          
CCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGgtaacgtatgccctttaagtataggaataggacataatcttcatcctttttgtaa-gtttggaatttggattatctaataatctaatttgattcattttggtactattttctgaccag

upper sequence: AT4G35640.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G08930.1 (Glycine max), 5'ss of exon 2
CCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGgtaaaaacgctatctcgtatcggtgaatcttccttttgacactgatattattgtctgagaatgtgactgcagtgtaatgttttttttttttggtccattgaag--
||||||||||||  | ||||| ||||||||||||||||| || ||||| || ||  | ||||||| || ||| ||  | || ||||| |||||||||||||| |      ||| |    |   |   | ||| |  |    ||||| | |   | |    || | | | |    ||     |||||  |    |  ||| |||  
CCAAAACCCTACTCTCTTGGCCACTCAGCTTATGGATATCTTCTGCAATGTCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAGgtcat--tcttatttaagcttaattc-tgttcttactttgtctgatttcacaattttg--atctcaatactaattaggtcatttttactgcaatttatttaagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875710|gb|AU236541.1|AU236541
EST:     TTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAG                         GCATTCAAAGACAGAGATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTA
genomic: TTATGGTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGgtaaaaacgc ... tccattgaagGCATTCAAAGACAGAGATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTA