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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattttcttctcagtatacaatctgatctgcgataatgaatcgtttctagtcagatttggttattggttcattgtaatttgtttactgtag

Basic information

species Arabidopsis thaliana
transcript AT4G35450.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041566|gb|DR337321.1|DR337321
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAWTCGACGGAGGAGAATARGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041544|gb|DR337299.1|DR337299
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|124744306|gb|EH835468.1|EH835468
EST:     TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCG
EST: gi|152034676|gb|BP834471.2|BP834471
EST:     TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041556|gb|DR337311.1|DR337311
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|124790264|gb|EH879943.1|EH879943
EST:     TACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACAGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041563|gb|DR337318.1|DR337318
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattttcttctcagtatacaatctgatctgcgataatgaatcgtttctagtcagatttggttattggttcattgtaatttgtttactgtag

- - - - - - - - - - - - - - -  GGAGAA