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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattttcttctcagtatacaatctgatctgcgataatgaatcgtttctagtcagatttggttattggttcattgtaatttgtttactgtag

Basic information

species Arabidopsis thaliana
transcript AT4G35450.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041554|gb|DR337309.1|DR337309
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041565|gb|DR337320.1|DR337320
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041556|gb|DR337311.1|DR337311
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041562|gb|DR337317.1|DR337317
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041557|gb|DR337312.1|DR337312
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041567|gb|DR337322.1|DR337322
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041568|gb|DR337323.1|DR337323
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041563|gb|DR337318.1|DR337318
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|124891466|gb|EH970368.1|EH970368
EST:     TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAA-TCCTCTTCTTTCAG                         ATGAGAAACCCA
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCA
EST: gi|124790264|gb|EH879943.1|EH879943
EST:     TACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACAGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041544|gb|DR337299.1|DR337299
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041553|gb|DR337308.1|DR337308
EST:     TTAGTCATATTTAATGGCTTCMAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041552|gb|DR337307.1|DR337307
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|152034676|gb|BP834471.2|BP834471
EST:     TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG
EST: gi|86041566|gb|DR337321.1|DR337321
EST:     TTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAG                         ATGAGAAACCCAAWTCGACGGAGGAGAATARGAGTTCTAAGCCGGAATCAG
genomic: TTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattt ... tttactgtagATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGgtgattattttcttctcagtatacaatctgatctgcgataatgaatcgtttctagtcagatttggttattggttcattgtaatttgtttactgtag

- - - - - - - - - - - - - - -  GGAGAA