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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag

Basic information

species Arabidopsis thaliana
transcript AT4G35230.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctt--tttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag
 |  | || | |||||| || |  || || || || |||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| | ||||| |||||| ||   |||||  |||||| ||   | |  |||  |     |   ||   | || ||| |    |||     | | |||| || ||||   |||    |                                                                                       
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatctttactcttg--tttatctcatcttttcattcatt-----cattcattcattgtttcatttattcag---------------------------------------------------------------------------------------

upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag
 |  | || |||||||| || || || || || || |||||||||||||| ||||| |||| |||||||||||| |||||||| |||||| | ||||| ||||||  || |||| || | |  | |  | |    ||   |||     || | |  |   | |    |||    | || |||| || | ||   | ||                                                                                           
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctc-ttgtctagtagtgtttaacttat--ctg-----ttcattgtttgattcattcattgattgatt-cattgattgattgattcag-------------------------------------------------------------------------------------------

upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctg---ggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag
 || | || ||| ||||||| ||||| |||||||| ||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| |||   |     ||| | |      |||   |  ||    |   | || ||  || ||  |    || |     | |||||    | | || ||                                                                                            
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttag--tttgttttattcatttgacctctgtgctaac------------------------------------------------------------------------------------------

upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 3
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgca-tttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag
 || | | ||||||||||||||| || ||||| || |||||| |  | |||||||| ||||  ||||| ||||| |||||||| || |||||||| || |||| |  |  | |   || | |     |  |  | || ||   || | || |      ||| ||   |   |  | ||| |   ||   ||| ||| |||    ||                                                                                    
AGACTGGTGAATTTGATTGGATACTGCTGTGAAGGTGATGAGCGTTTGCTTGTTGCGGAGTATATGCCGAATGACACTCTTGCGAAACATTTGTTTCACTgtaagtgtcatatttgtcgtgtggaagccttcat-tacag--aggcaattca------ttttcttcgagaggtggtttgtaacctaacttttctgtgagaaatgtgttg---------------------------------------------------------------------------------