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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTAGGATTGACCGGGACAAAGCTCGGATGCGGCGAAGGTGGTTGTGGGTCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGTGTgtgcgtatctttttctctcataggttgcatctgctttgcttaagtttaggccttcttatactgttcataccggaaacttttattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM5G888877_T01 (Zea mays), 5'ss of exon 1
ATTTAGGATTGACCGGGACAAAGCTCGGATGCGGCGAAGGTGGTTGTGGGTCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGTGTgtgcgta------tctttttctctcataggttgcatctgctttg-cttaagtttaggccttcttat---actgttcataccggaaacttttattgcag--
     ||  |    ||||||||||| ||||| || ||||||||||||||  ||||||| || ||||| ||| | |||||||||    |||||| ||   |||  | |      || | | ||  |  | |||     |||| |  |||  |  ||  ||   | |    || | | | | | ||||  | | |    |  
-----GGCCTTCGAGGGACAAAGCTTGGATGTGGTGAAGGTGGTTGTGGAGCTTGCACTGTCATGGTCTCTTGCTATGACCGAATTACAAAGAAATCACTgtaagaactacattcctgtactgactaatgttctgaatgctctctcttctgcctaaaccaattaaagtgacaggtgacaacagaaatatatttcaatgtt

upper sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 2
ATTTAGGATTGACCGGGACAAAGCTCGGATGCGGCGAAGGTGGTTGTGGGTCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGT------GTgtgcgtatctttttctctcataggttgc--atctgctttgcttaagtttagg----------ccttcttatactgttcataccggaaactt-ttattgcag--------------------
|| ||||  ||||||||||||| || ||||| || ||||||||||||||  ||||||| || ||||| |||   | |||  ||   |  |||| |||       |||||    ||  | | |||| |   |||   || || |   | ||  | |             | | ||| |  | |    ||   ||| ||   |||  ||                    
ATATAGGTCTGACCGGGACAAAACTAGGATGTGGGGAAGGTGGTTGTGGAGCTTGCACAGTTATGGTTTCTCAATTTGATAGAAGATTGAAGAAATGCTCgtaagtgtgtcgttcactctttctcgtgccttggtgatttgatgctcctacatgtgaagtgtgaagcacttccttcttgtatcttgacgtcaaatttaccattttagttttgaaaatgttctttcag

upper sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 2
ATTTAGGATTGACCGGGACAAAGCTCGGATGCGGCGAAGGTGGTTGTGGGTCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGTGTgtgcgtatctttttctctcataggttgcatctgctttgcttaagtttaggcc-ttcttatactgttcataccggaaacttttattgcag------------
|  ||||  |||| ||||||||| | || || |||||||||||||||||| ||||||| |||||||| |||  || |||   | | || |||| ||||||||| |||||||| ||  |  |   |  |  |    |||   || | ||     ||| |  || | | ||     | | ||   |                 
ACATAGGTCTGACGGGGACAAAGTTGGGCTGTGGCGAAGGTGGTTGTGGGGCTTGCACTGTGATGGTTTCTTATTTTGATGAAAATTCGAAGAAATGTGTgtgagtatctttctccatt-tctctccctcccttcttgaagaactatatcttgttcctccacaggtaatggtttagagttaattcttgactacgacgagcg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877239|gb|AU238070.1|AU238070
EST:     TCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGTGT                         GCATTATGCTGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGAT
genomic: TCTTGCACCGTGATGGTGTCTAGTTATGACCGAGAGTCAAAGACATGTGTgtgcgtatct ... tttattgcagGCATTATGCTGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGAT