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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGgttagtgtctcttaactttgctttcaagattaccttgatacgatgaggcttctccaaaatctgctatatttctgttttgaaatgcttttatgttagagccatctttcttcttcgtgcttctgctgctaatattattttttgtacgacag

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163995222|gb|ES073009.1|ES073009
EST:     GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG                         AGGATGATACTAGCATACCAAC
genomic: GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGgttagtgtct ... tgtacgacagAGGATGATACTAGCATACCAAC
EST: gi|164185988|gb|ES009632.1|ES009632
EST:     CTACTTGGTTCTCCGAGCTCTTGATACTGTTG                         AGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATCCTGATAGCTT
genomic: CTACTTGGTTCTCCGAGCTCTTGATACTGTTGgttagtgtct ... tgtacgacagAGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATCCTGATAGCTT
EST: gi|124957437|gb|EL032273.1|EL032273
EST:     GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG                         AGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATC
genomic: GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGgttagtgtct ... tgtacgacagAGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATC