Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGgtgctaatccaaacaaactcaaatgaattagtaaactctaatttggaattaatctaacagttagttctttctttgttccttgattag

Basic information

species Arabidopsis thaliana
transcript AT4G34500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G12570.1 (Glycine max), 5'ss of exon 2
------AGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGgtgcta-atccaaacaaactcaaatgaatta--gtaaactctaatttggaattaatctaacagttagttctttctttgttccttgattag------------------
      |||||||||| || || || || ||||| ||||| |||||||| |||||||| |||||| || || | ||||||||||| ||  |||||| |||  |  | || |   |  | |    |   | |   ||    ||||   |  |  |    |||     |||        |  ||| ||  || || |                   
AAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAGAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGgtatggttgttctgtttacatggccgttattcttttgacataaatgtttttcagacgataaaagttcagaattcctgtaattttttttttaatgacacttttattttcattcag

upper sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G04780.1 (Glycine max), 5'ss of exon 2
------AGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGgtgctaatccaaacaaactcaaatgaatt--agtaaactctaatttggaattaatctaacagtt---agttctttctttgttccttgattag
      |||||||||| ||||| || || ||||| ||||| |||||||| ||||| || |||||| || || | ||||||||||| ||  |||||| |||  |  | |     | ||  |    |  ||||  ||  ||   |    | ||  |||||  | | |   ||   |  |    ||||     |   | ||
AAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGgtattgttctgtttacatgcctgttataatgtttttcagacgataaaagttcagaattcctgtgattttttttaaatgacacttttactttcattcag

upper sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 2
------AGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGgtgctaatccaaacaa------actcaaatgaattagtaaactctaatttgga---attaatctaacagt-tagttctttctttgttccttgattag--------
      ||| ||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || ||  | || |||||||| ||  || | |||||  |    |  | |||||           | |  ||||  ||  | ||    |   | ||    |   | | || |  || | | | | ||     |  | | |        
AGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCCCAAAGgtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacag