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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATCGAACCGTGGGACATTCCTTTTGTGCATTACCCTAAACCAAAGACATATAACAGgtaaagagagatacaaaaagtttgagcctttatcatgttttgagtctaaaagcttgtattgattagtgcttttgtgggttttgaatgttttag

Basic information

species Arabidopsis thaliana
transcript AT4G34420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34420.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G33310.1 (Glycine max), 5'ss of exon 2
TCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATCGAACCGTGGGACATTCCTTTTGTGCATTACCCTAAACCAAAGACATATAACAGgtaaagagagatacaaaaagtttgagccttta-tcatgtttt-gagtctaaaagc-ttgtattgattagtgcttttgtgggttttgaatgttttag
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TTTTAGACATCAAGGTTGTTCAAAAGCCATGCCCGGAACCTAACATTGAACCTTGGGAGATTCCTTTTGTGCATTACCCTCACCCCAAAACTTACAGCAGgtgaaattaatcatatactgcttaaaattaaggttttgttgcagaatctgtttgaattttactgat--gttgctttatttggtatgcctttgttag