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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACAAGATCGACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattcttctttctgacgtaattaacaaaaaagatgatgaagataatgaaataattaaaaactcatggcctaattaggttgatttaatatcttgatgagaatttctgtatacgcaaatttgtttcctttttcatagaagaaagtgtggtaactgattattgtgtgtggttgggtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34050.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116431209|gb|EG473801.1|EG473801
EST:     AGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: AGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|124767213|gb|EH857343.1|EH857343
EST:     ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGA
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGA
EST: gi|125012543|gb|EL084812.1|EL084812
EST:     CCCTGCTCCTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|124923130|gb|EL001353.1|EL001353
EST:     ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGC
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGC
EST: gi|116428558|gb|EG471150.1|EG471150
EST:     ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|125093528|gb|EL151079.1|EL151079
EST:     CTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: CTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|164181633|gb|ES123865.1|ES123865
EST:     CTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: CTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|125164199|gb|EL190896.1|EL190896
EST:     TCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: TCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|125257471|gb|EL271556.1|EL271556
EST:     TTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: TTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
EST: gi|124962165|gb|EL036609.1|EL036609
EST:     ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTT
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTT
EST: gi|124797423|gb|EH887102.1|EH887102
EST:     ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTG-C                         GAGAAGAACCATGGAACATATGACTT
genomic: ACTTCAGGGAAGGCCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTT
EST: gi|124843660|gb|EH928097.1|EH928097
EST:     CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGAC                         GAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC
genomic: CCCTGCTCTTCCCGTTCTTGATGAAATCGTTGCTGACgtaagcattc ... ttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGAC