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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAGgtttgttttcaactctcttttaagctgttttcttattattaacattttcaggaaaaaaaaggaattctataatttaatccttaggattgcttcag

Basic information

species Arabidopsis thaliana
transcript AT4G33950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 2
ATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAGgtttgttttcaac---tctcttttaagctgttttcttatt--attaac-attttcaggaaaaaaaaggaattctataatttaatccttaggattgcttcag
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ATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAGgtctggtcgaaatgaatttttcccaaccacattttctatccagtgaatgattctcagttcaat-----aattttatgtttt-----ttaatcatactctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125276865|gb|EL290950.1|EL290950
EST:     TCCTTAAGACATCCCAATATCGTTAGATTCAAAGAG                         GTTATATTAACACCAACCCATTTAGCCATTGTTATGGAATATGCATCTGGA
genomic: TCCTTAAGACATCCCAATATCGTTAGATTCAAAGAGgtttgttttc ... attgcttcagGTTATATTAACACCAACCCATTTAGCCATTGTTATGGAATATGCATCTGGA