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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtcaaagatctttactttacttgctcttcttactctcctggtctgcttctctcagcctaagaccaaattgatgtgttctgtctcaaagaatggttgcccttgcccgattatttatattaaaaatctctcttttcttgtttttttttttctttgctgtatag

Basic information

species Arabidopsis thaliana
transcript AT4G33520.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124762278|gb|EH852408.1|EH852408
EST:     TGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
genomic: TGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
EST: gi|19876713|gb|AU237544.1|AU237544
EST:     TGACATGTGGAGGGTGNTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCNTCAGCT
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCT
EST: gi|86070587|gb|DR366344.1|DR366344
EST:     TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCGAGTTGCTTCAGCTAGCGATAATCTCACCACCGAGACGGCAATTGTG
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
EST: gi|125029742|gb|EL102011.1|EL102011
EST:     TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCTT
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtcaaagatctttactttacttgctcttcttactctcctggtctgcttctctcagcctaagaccaaattgatgtgttctgtctcaaagaatggttgcccttgcccgattatttatattaaaaatctctcttttcttgtttttttttttctttgctgtatag

- - - - - GTGGAG
- - - - -  TGGAGG
- - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - -  AAGAAG