Sequence
atgc intronic sequence ATGC exonic sequenceTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAGTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGgtttataaacttctctccttgtttataatcttgtttgttatgatgttaaccaattgagaatacacttttcttaagtcagaaacggtttcttatttcttgatgttgttgtgacaaaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G33510.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G33510.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os08g37790.1 (Oryza sativa), 5'ss of exon 2
TGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAGTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGgtttataaacttctctcc--ttgtttataatctt-gtttgttatgatgttaaccaattgaga-atacacttttcttaagtcagaaacggtttcttatttct-tgatgttgttgtgaca--aaacag
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TGAATTTGCTGCGGGCTTTTGCTACTGGAGGTTATGCTGCCATGCAGAGGGTAACACAATGGAACCTTGACTTCACAGAGCATAGTGAACAGGGTGACAGgtggttacctttatcttaaactgtcccaattcttcattgattgcttctcagatgaattgattcatgtaattcatttaagccacagccatatgctcaccactgcaattcttgtacaatgttgaacag
upper sequence: AT4G33510.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G06020.1 (Glycine max), 5'ss of exon 2
TGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAGTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGgtttataaacttctctccttgtttataatcttgtttgttatgatgttaaccaattgagaatacacttttcttaagtcagaaacggtttcttatttcttgatgttgttgtgacaaaacag-
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TGAACCTTTTGCGGGCATTTGCCACGGGAGGTTATGCTGCCATGCAAAGGGTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcata---atttttagcc--atttctaaatctatttctg--gattttgactcgtcagtg-------tttattaattctta------ttcttgtatatttgaaatgttttggatggatggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124780028|gb|EH869971.1|EH869971EST: GTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAG GTACCGTGAATTGGCTAATAG
genomic: GTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGgtttataaac ... gacaaaacagGTACCGTGAATTGGCTAATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAGTTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGgtttataaacttctctccttgtttataatcttgtttgttatgatgttaaccaattgagaatacacttttcttaagtcagaaacggtttcttatttcttgatgttgttgtgacaaaacag
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