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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTACCTGTTAAAATTGTGTTTCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCTTGGTCTTGGTGACATGgtacagactaatcccttctttgattttaagattggtatgtcgttatatgtgtactaactgtaagaaatgttctctctcagactatagtgacgaggagataaaaaaaacatgttgtattgattaactgttttgttgttccag

Basic information

species Arabidopsis thaliana
transcript AT4G33410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0050g00580.t01 (Vitis vinifera), 5'ss of exon 3
GGAACTACCTGTTAAAATTGTGTTTCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCTTGGTCTTGGTGACATGgtacagactaatcccttctttgattttaagattggtatgtcgttatatgtgtactaactgtaagaaatgttctctctcagactatagtgacgaggagataaaaaaaacatgttgtattgattaactgttttgttgttccag
|||  | || || || || || |||||| ||||| | || || || || || || || |  | | |  | || ||||||||||||||||||||||||||||||   | |  |   |  |      || |  ||   |||   ||||     |  |  |||| |    | || |  ||  ||  || | |  |  |   | |||                                      
GGAGTTGCCGGTGAAGATCGTTTTTCCTAGGAACTTGTTTGGAGGAGTTGTTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaattttttttcttccatgatttaacttaccatgcacttat---cctggttgctgttatt--ttttgttactttgaaaattgaggtggtgcattgaaatt------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085811|gb|DR381570.1|DR381570
EST:     TGCCCGGTGTGAGTGCCTCAGATTTCATGATGCTTGGTCTTGGTGACATG                         GCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGCTTTGACCATCGAAAA
genomic: TGCCCGGTGTGAGTGCCTCAGATTTCATGATGCTTGGTCTTGGTGACATGgtacagacta ... gttgttccagGCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGCTTTGACCATCGAAAA