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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATTTTGTGCTCCATAGCGATTCCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcgccgttctatcgagtatatggtagaaattacgcatcagtttattcaaaatcttacttttttgttttcgattaaacttgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G31990.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152038432|gb|AV822767.2|AV822767
EST:     TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG                         GATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
EST: gi|124766630|gb|EH856760.1|EH856760
EST:     TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG                         GATAAGCTAAAGCTTGGAACTTCTGCTTC
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTC
EST: gi|125205383|gb|EL220337.1|EL220337
EST:     TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG                         GATAAGCTAAAGCTTGGAA
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAA