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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G31700.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| ||| ||||| || ||||| |||||||| ||||||||||||||  | ||| | || ||||| |||||| | |||||| | |||||  |  |   ||  || || ||  ||||| | || | | |||   |||  | ||    | | | ||||    ||||    |                         
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattg-actttcggatat-tcatgcccttgc-tctgaccatat-tatgttac-ttgtatggcag------------------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| ||| || || || |||||||||||||| ||||||||||| ||  | ||| | || ||||| |||||| | || ||| | ||||  |    |  || |      ||||| ||       |||  |  ||||   ||||  || |   ||||| |  |||  ||   |  | |||  || ||   |     
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaagatgc------ttacatttgaatggttatgtttcattttgctttgc-tg-gcaggtgttctaatgtgaatgttccat-ttttatactgacag-----

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttg----catctataatg--gatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| |||||| || || |||||||| |||||||||||||| |||||||||||| | || |||||||| ||| |||| ||  | ||||   | || |  ||  ||    |  ||| |      ||||| | |    ||||  ||| ||    |  |       | ||||||     |  || |||               
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctat-ttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc--------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| |||||| || || |||||||| |||||||||||||| |||||||||||| | || |||||||| ||| |||| ||  | ||||   | || |  ||  ||    |  ||| |     | ||  |  | |   |||  | | ||    |   | | | |  |||    | |                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctat-ttacagtgtactctcagcaccatcttttactctgattcttatctgaacat---tcgatatcaattc-tgtag-------------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| |||||| || || |||||||| |||||||||||||| |||||||||||| | || |||||||| ||| |||| ||  | ||||   | || |  ||  |    |   ||| |     | ||  |  | |   |||  | | ||    |   | | | |  |||    | |                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagt-gtactctcaacaccatcttttactctgattcttatctgaacat---tcgatatcaattc-tgtag-------------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
         || || || |||||||||| |||||| || || || ||||| |||||||||||||| |||||| ||||| | || ||||| |||||| |||| ||| ||||||  || ||   ||    |   ||  |||                                                                               
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactgtat---ctccattgtactc------------------------------------------------------------------------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac-ataataccttt----tctta-cacttttgcatctataatggatttgtatttgtgtgtgtg-tgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || |||||||||| |||||| || || || ||||| |||||||||||||| |||||| ||||| | || ||||| |||||| |||| ||| ||||||  || ||  ||   || ||    ||| | |||     | | ||     | ||  ||| ||    | || | ||  ||| |||||                             
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattg-tgtag-----------------------------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||  |||||   |  |      | | |||  |   || |||    |||||     |  || || |  || ||     ||   |    | | |  | ||||  || | ||       
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttga--ttataaatacatcataattattagtttgaagcattcattc--aactcatgt-gttttatatttggaat----

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
||||| |||||||| ||||  ||||| || || || ||||| |||||||||||||||||||| ||||| || || |||||||| || ||||| ||  ||||||    |   |  |||  |  || |   | |||    | |  |  ||   |||   |   | |   || || ||||| |||   ||||| | |       |||  |  
GGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtag--gattgttttac--tgcctcaatgtattgttgttttggtttataaatatc-ataattataattgatt-gctgttgat-ggcattgatacaactgccgtgttc--

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 5
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||  ||||||  |  |      | | |||  |  | |||      |||||     |  || || |  || ||     ||   |    | | || | |||   || |   ||||   
GGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtatgtctattctgaagccttt--tgtattttgctgattataaatacatcctaattattagtttgaagcattcattc--aactcacgt-gttctatatt---tgaatt-

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta---actaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
|| || || ||||| || |  || ||||| || || ||||| || |||||||||||||||||  ||||||| || |||||| | |||||||||||| | ||||     ||    |||| || | | ||   |||      ||||| |   |   || || ||||    | ||||||  | |   || | ||   |||    |  |||     
GGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgtagctttaatgccctattttgttcttc-----ctatattttctgcttagttctgtgcccttatgttttaatttt--tttaaatcaattccatttttgtg-----

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaaca-taatacct---tttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag
||||| |||||||| ||||  ||||| || || || ||||| ||||| ||||||||||||||  |||| || || |||||||| |||||||| ||  ||||||   |     || | | |   | | ||    |||||  | |||||| ||||  | || |      ||       |||  | | |   ||||     |              
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttg-gtttataattgattgatgttggcagcattgatccaactgccat-gttctgcatttggctgcgg-----------

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggat-ttgtatttgtgtgtgtgtgtgttttg---ctgt-agattaacattgtttcgtaatgggt-gaacag
|| || ||||||||||||| ||||||||| || |||||||| || || ||||||||||||||  ||||||| ||||||||| | |||||||||||  | ||| | ||||| |   || | |||| |  |||    |   || |      ||   ||  | | | | ||    |||   || | ||||| |      ||  |  |   | || |||
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaac-tgggac-tgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataa-taccttttcttacacttttgcatct---ataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgg----gtgaacag-------------------------------------------------------------------
|| || || ||||| || | ||| || || || ||||||||||| |||||||||||||||||  |||| |||||||| || |  ||| |||||||| |||||   || ||     |||   ||  | ||  |||  || |   | |||  | |    ||| | | | | ||| ||    | ||  |   |||| | || |  | |    |||   |                                                                    
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatat-tgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta---------------actaaacataataccttttcttacacttttgca--tctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtt---tcgtaatgggtgaacag-----------------------------
|| || || ||||| |||| ||| || || || |||||||| |||||||||||||||||||| || ||||| || |||||| | || ||||| ||  |||||                | ||    |  | |  |  |   || |  | ||  | ||  ||||||        || |    |  |||||||||           |||||   | || || | |||                                 
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagt-tagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta--actaaacata-ataccttttcttacacttttgcat---ctataatggatttg-tatttgtgtgtgtgtgtgttttgctgtagattaa-cattg-------tttcgtaatgggtgaacag--------------------------------------------------------------
|| || || |||||||||| ||| || ||||| ||||| |||||||||||||||||||||||| | |||| ||||||||| |  ||  || | ||| ||||||   | | | ||| | ||   |  |       |    |   |||   || |   |  |||| |||    |    |  |  |||  |  || | |||       ||  | | ||| |  |  |                                                              
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaagtaggctagtctgaacgagacatttatgtcctcgctgctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagtatgggtgcgagaatttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttg-----catctataatggatttgtatttgtgtgtgtgtg----tgttttgctgtagattaacattgtttcgtaatgggtgaacag---------------------------------------------
|| || || |||||||| | ||| |||||||| ||||| |||||||| ||||||||||||||| | || | ||||||||| |  || ||| | ||| ||||||  |  | ||||   |   |  ||    |  |     ||| |||   |    ||  |   ||||          ||  ||||  |  | || | ||| | |     |   |  |                                               
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgta--tggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta----actaaaca--taataccttttctta-cacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacat------tgtttcgtaatgggtgaacag-------------------------------------------
||||||||||||||||| | ||| || || || ||||| |||||||| ||||||||||| || ||||| |  || ||||| |  ||  || | ||||||||||      ||| ||  |    | |  ||||  ||   | |       |||   | |  ||   |||    |   ||     || | |   || |       |  || | ||    |                                                
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta--------actaaacataataccttttcttacacttttgc---------atctataatggatttgtatttgtgtgt-gtgtgtgttt-tgctgtagattaaca-----ttgtttcgtaatgggtgaacag----------------
||||| || |||||||| | ||| || ||||||||||| ||||| || ||||||||||| || ||||||| ||| || || |  ||  |  | ||||||||||        | |||    ||   | |    |  | || |||         |||  || |||||  |  | |    ||  ||  |  || | ||| |  | |  |     |  |||| ||| |  || ||                  
GGATATGTCTTCAAGATTATGGGAGGATGCGATAAGCAGGGTTTTCCCATGAAGCAGGGTGTGTTGACTCAAGGACGCGTACAGCTCCTAATGCACCGAGgtacaatattgattaattggaacctcatggtctgaagttgtgcctgcaaggaatccgtactggatacgcgtctcgtcgtcatgcattcttgtactgcatgtcactaaaatctaatttcttaacgattgtacttgatgttttctcggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037904|gb|DR333659.1|DR333659
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|86037944|gb|DR333699.1|DR333699
EST:     AAGCAGGGAGTTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: AAGCAGGGAG-TTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|125048742|gb|EL121011.1|EL121011
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGG
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGG
EST: gi|86040573|gb|DR336328.1|DR336328
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|47828814|gb|CK118498.1|CK118498
EST:     GGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|164152054|gb|ES075347.1|ES075347
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAAC
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAAC
EST: gi|125307136|gb|EL321221.1|EL321221
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTG
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTG
EST: gi|124929059|gb|EL006643.1|EL006643
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGA
EST: gi|164116565|gb|ES087986.1|ES087986
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCT-CAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAA
EST: gi|86037895|gb|DR333650.1|DR333650
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|86037892|gb|DR333647.1|DR333647
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|124845450|gb|EH929887.1|EH929887
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|125084696|gb|EL144816.1|EL144816
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAG
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAG
EST: gi|86037898|gb|DR333653.1|DR333653
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|125281628|gb|EL295713.1|EL295713
EST:     CAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAG
genomic: CAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAG
EST: gi|125118127|gb|EL166972.1|EL166972
EST:     AAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
genomic: AAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAA
EST: gi|124913126|gb|EH987000.1|EH987000
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTT
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTT
EST: gi|125254200|gb|EL268285.1|EL268285
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAGGACATGGAAGGAGAAC
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAAC
EST: gi|125311964|gb|EL326049.1|EL326049
EST:     GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAG                         GAACTCCTTGCTTCAGAG
genomic: GAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac ... gggtgaacagGAACTCCTTGCTTCAGAG