1 5' 3' | 2 5' 3' |
GCCATCAATGCGGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGgtacactatacactatccttttcttgccccattactaaatgaaactaggcctttaaggaatcttaagaacaaatagtgcatagacagacttattcacttc...
species | Arabidopsis thaliana |
transcript | AT4G31270.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAG CTTTTGTAGGATCAAAAAGATCAAGACAGCGAACAATGGTCATGAAGGAGAEST: gi|86078038|gb|DR373795.1|DR373795
genomic: GTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGgtacactata ... ttaaattcagCTTTTGTAGGATCAAAAAGATCAAGACAGCGAACAATGGTCATGAAGGAGA
EST: TGATAGTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAG CTTTTGTAGGATCAAAAAGATCAAGACAGCGWACAATGGTCATGAAGGAGA
genomic: TGATAGTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGgtacactata ... ttaaattcagCTTTTGTAGGATCAAAAAGATCAAGACAGCGAACAATGGTCATGAAGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATCAATGCGGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGgtacactatacactatccttttcttgccccattactaaatgaaactaggcctttaaggaatcttaagaacaaatagtgcatagacagacttattcacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa