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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAGgtaagttctttgtatttgcagttacttcaatgaaagaaaataccattttgataatagtgatttctcatatcctttcttttgtttcctttactatggtctatatttgctttag

Basic information

species Arabidopsis thaliana
transcript AT4G31170.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051557|gb|DR347312.1|DR347312
EST:     CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG                         GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
genomic: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
EST: gi|86051555|gb|DR347310.1|DR347310
EST:     ACGAAACAGAAACTTTCATTTCTTCTAGCTTCTTGAATTT-CTCTTAAAG                         GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
genomic: ACGAAACATAAACTTTCATTTCTTCTAGCTTCTTG-ATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
EST: gi|116384332|gb|EG426924.1|EG426924
EST:     CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG                         GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
genomic: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC