1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTGTTTTGCAGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatatttttcttcaaaatgcttttgatgataagtatccagagcttatatagctaacagtcttccttctacttcacag
species | Arabidopsis thaliana |
transcript | AT4G30220.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGGAATGGAATACAAAG GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGEST: gi|125309073|gb|EL323158.1|EL323158
genomic: GGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: GGGGAAGTGGAATACAAAG GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGEST: gi|164027104|gb|ES017576.1|ES017576
genomic: GGGGAA-TGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: TATCGTCAAGCTTAAATGGGGAATGGAATACAAAG GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGEST: gi|124848527|gb|EH932964.1|EH932964
genomic: TATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: CTTAAATGGGGAATGGAATACAAAG GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGEST: gi|19874858|gb|AU235689.1|AU235689
genomic: CTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: GACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAG GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: GACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTTTTGCAGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatatttttcttcaaaatgcttttgatgataagtatccagagcttatatagctaacagtcttccttctacttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT