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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGgtttcacacctcaaccaaatctggaccaaaccaatcatatatgatgataatgctgataaattcctctgttttcttttgttttggattttccag

Basic information

species Arabidopsis thaliana
transcript AT4G29880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G06920.1 (Glycine max), 5'ss of exon 2
AAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGgtttca-cacctcaaccaaatctggac----caaaccaatcatatatgatgataatgctgataaattcctctgttttcttttgttttggattttccag--
|  | ||||| || |||||||| || ||||||||||||||| |  | |||||||| ||||||||  |||  ||||||||| |||| ||| | ||||||||||| |  ||  |  | ||   ||   |     |  | | |  | |||||| ||||       |  |||     ||||   |   | |  |||  |     
AGTCCCTTCCTAATTCCATTGGCTGCCTTTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcatcacttctctttctattctatttttttatgataataaaatcatcatgttctgggattttgcatatatataaattaacttttc

upper sequence: AT4G29880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G18210.1 (Glycine max), 5'ss of exon 2
AAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGgtttca-cacctcaaccaaatctggaccaaaccaatcatatatgatgataat--gctgataaattcct--ctgttttcttttgttttggattttccag---
|  | ||||| || |||||||| || || |||||||||||| |  | |||||||| ||||||||  |||  ||||||||| |||| ||| | ||||||||||| |  ||  |  | ||  |||     |   | ||  | ||||||||||||    | || || | ||  |   || | | | | |   |||         
ACTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcacttctct-taatttctattttttatgatgataattaaatcatgaaattctggcaaattgcatatatatataattgaattaact