1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGACTCATCCTGAGTTGTATGAAGATATTGGTATTAAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCTAAGgtttgtctttgtacctagaatctaatgagtattagtgtttgtttgcagtatagcttagtttactacttaacttgtcaattacattcagttaatcgtttgt...
species | Arabidopsis thaliana |
transcript | AT4G29040.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATTGCTTGCTAAG GCGGTTGCGAATCCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGEST: gi|164113956|gb|ES101350.1|ES101350
genomic: ACATTGCTTGCTAAGgtttgtcttt ... cttattttagGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAG
EST: CCTGGAACTGGGAAGACTTTGCTTGCTAAG GCGGTTGCGAATTCTACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGEST: gi|125016779|gb|EL089048.1|EL089048
genomic: CCTGGAACTGGGAAGACATTGCTTGCTAAGgtttgtcttt ... cttattttagGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAG
EST: TGGGAAGACATTGCTTGCTAAG GCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGEST: gi|47831321|gb|CK121005.1|CK121005
genomic: TGGGAAGACATTGCTTGCTAAGgtttgtcttt ... cttattttagGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAG
EST: GTGTGATTTTGTATGGTGAGCCTGGAACTGGGGAGACTTTGCTTGCTAAG GCGGTTGCGAATTCTACATCAG
genomic: GTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCTAAGgtttgtcttt ... cttattttagGCGGTTGCGAATTCAACATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGACTCATCCTGAGTTGTATGAAGATATTGGTATTAAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCTAAGgtttgtctttgtacctagaatctaatgagtattagtgtttgtttgcagtatagcttagtttactacttaacttgtcaattacattcagttaatcgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA