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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGGTTTGTCAAAGAGAGTGTGTTTTAATGTCAATTTCTGGGTAACCAAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcctaagcatgtcaattacttttttttttttttttttaacattctcaattttcttgagttggtgacgttttcgagattttgttgattag

Basic information

species Arabidopsis thaliana
transcript AT4G27040.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404419|gb|EG447011.1|EG447011
EST:     AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAG                         TGCAAGACGACAAGTGATGAAAAGATAGAGACCAAGAAAGGCTTCAAGTTT
genomic: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
EST: gi|116404418|gb|EG447010.1|EG447010
EST:     AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAG                         TGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
genomic: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
EST: gi|116404396|gb|EG446988.1|EG446988
EST:     GCCCGGCTCTCTGATTTTTTAAG                         TGCAAGACGACAGGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
genomic: GCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTGGTTTGTCAAAGAGAGTGTGTTTTAATGTCAATTTCTGGGTAACCAAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcctaagcatgtcaattacttttttttttttttttttaacattctcaattttcttgagttggtgacgttttcgagattttgttgattag

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