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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATTCCTACAAGGATATTTTGACAAGTCTTCCTAAACCTGGTGGTGGAGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTGgtatgtttcctcgtgcctctatctgttttgtatgtaatggatttctggtgaagttaatacctttttgtgataatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G26970.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116431680|gb|EG474272.1|EG474272
EST:     AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTG                         ATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
genomic: AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTGgtatgtttcc ... gataatgcagATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
EST: gi|116431682|gb|EG474274.1|EG474274
EST:     AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTG                         ATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
genomic: AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTGgtatgtttcc ... gataatgcagATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
EST: gi|116431683|gb|EG474275.1|EG474275
EST:     AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTG                         ATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
genomic: AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTGgtatgtttcc ... gataatgcagATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
EST: gi|116431681|gb|EG474273.1|EG474273
EST:     AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTG                         ATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
genomic: AGAGTATGGAAAGTACTACTCGTTACCAGCTTTAAACGATCCAAGAATTGgtatgtttcc ... gataatgcagATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
EST: gi|116380645|gb|EG423237.1|EG423237
EST:     GATCCAAGAATTG                         ATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT
genomic: GATCCAAGAATTGgtatgtttcc ... gataatgcagATAAGCTGCCATTTTCTGTAAGGATACTATTGGAATCAGCGATTCGTAACT