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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATGTAAGAATCTGGTAAAATCCGGAGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGgtaaatcatagaccactgattttgatattctgataatggtttctgtagcttggaagagtctaatcagtattcttatgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G26850.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125064177|gb|EL131893.1|EL131893
EST:     AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAG                         TGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGTCACTGCCTGC
genomic: AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGgtaaatcata ... ttatgtttagTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGTCACTGCCTGC
EST: gi|124768830|gb|EH858960.1|EH858960
EST:     AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAG                         TGGGAGGATAGGTTCCAAAGAGGACT
genomic: AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGgtaaatcata ... ttatgtttagTGGGAGGATAGGTTCCAAAGAGGACT
EST: gi|124764982|gb|EH855112.1|EH855112
EST:     GGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAAGAG                         TGGGAGGATAGGTTCCAAAGAGGACTTTT
genomic: GGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGA-GAGgtaaatcata ... ttatgtttagTGGGAGGATAGGTTCCAAAGAGGACTTTT
EST: gi|125247894|gb|EL261979.1|EL261979
EST:     TAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAG                         TGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGTCACTGCCTGC
genomic: TAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGgtaaatcata ... ttatgtttagTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGTCACTGCCTGC
EST: gi|124896657|gb|EH972871.1|EH972871
EST:     AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAG                         TGGGAGGATAGGTTCCAAAG
genomic: AGGCTATAGAGCCTCCTGTAGCTTTTCTCGAGTCCCTTGTTCTCGGAGAGgtaaatcata ... ttatgtttagTGGGAGGATAGGTTCCAAAG