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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgtacatatatacatacatcactcaaactaatataaatcacatatccatactcagattcttatgatatgttacttttgatattgtcag

Basic information

species Arabidopsis thaliana
transcript AT4G26390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G26830.1 (Glycine max), 5'ss of exon 3
CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgtacatatatacatacatcactcaaactaatataaatcacat-atccatactcagattcttatgatatgttacttttgatattgtcag----------------------------------------------------------------------------------------------------------------
 || || |||||||| |||||||| ||||||||||| ||| | ||  | || || || ||||||||||| ||||| |||| ||||||||||||||| ||||||   ||    || |   | | ||  || | |   | || | | |  | |  | | | |   || |||| | |||   |    |  |                                                                                                                
TGATATCATTGCTCTCTCTTTTGTTAGAAAAGGTTCAGACCTTGTGGAGGTCAGAAATCTACTTGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattctcaagtaaatgtattctgttttactttaactcttcaaataatttacagaaatgtcattttactttcactttgattctattttcaaacatacgtataagctctccgtacaagtctatgaaaacaagaaacaaagttctggcattgattaatctcccaaattgtacttatttgttgtctttgttag

upper sequence: AT4G26390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G02980.1 (Glycine max), 5'ss of exon 2
CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgtacat-ata-tacatacatcactcaaactaatataa---atcacatatccatactcagattctta---tgatatgttacttttgatattgtcag-----
 |||||||||||||| ||||||||  |||||||||| ||| ||||  |||| |||||  | || |||||||||||||| | |||  | |||||||| ||||||     |  | ||| |     |      |||||||   ||  || |||       | | |  ||   |  |   ||  || ||||||  |  |     
TGACATGATTGCTCTTTCTTTTGTTCGAAAAGGTTCTGACCTGGTGGAAGTCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAGgtatgccgtgctgcattcccttttttggaaaatataagtgattccagatctggttaaaaagtgatagtgttctgcattggttatgatatcctttgagatg

upper sequence: AT4G26390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G35110.2 (Glycine max), 5'ss of exon 3
CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgtacat-atat-acatacatcactcaaactaatataa---atcacatatccatactcagattctta-tgatatg--ttacttttgatattgtcag-----
 |||||||||||||| ||||||||  |||||||||| ||| ||||  |||| |||||  | || ||||||||||| || | |||  | |||||||| ||||||  |  | |  | | |     |      || ||||   ||     |||       | | | ||| || | ||  ||| || ||||||  |        
TGACATGATTGCTCTTTCTTTTGTTCGAAAAGGTTCTGACCTGGTGGAAGTCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAGgtatgtcgtgttgcgttctcttttatggaaaagataagtgattctggatctggttaaaaaatgttagtgttctgaattagttgtgatatccttgagatgc

upper sequence: AT4G26390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G07800.1 (Glycine max), 5'ss of exon 3
CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgta--catatatacatacatcactcaaactaatataaatcacatatccatactca--gattcttatgat-------atgttacttttgatattgtcag---
                           ||||||||| ||  | ||  |||| || || ||||| ||||| ||||| |||| ||||||||||||||| ||||||  |||   ||    ||   ||| || ||| | | |||| |  |   ||   |  || | ||  | |       |||||   | |  || | | |    
---------------------------AAAAGGTTCAGATCTTGTGGAAGTCAGAAATCTACTAGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattgtcaaatctccaaataaaa-atatcaaacctttgtaagaaaggactttttcgttcaagaaaatgttttctgttttacttttattat