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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagtcatgctctctttcatttccttctattttcagctagtggaaccaggtttaagctagttacatttctctagggatcttcgaatctaagcttg...

Basic information

species Arabidopsis thaliana
transcript AT4G25740.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053927|gb|DR349684.1|DR349684
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCC
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCC
EST: gi|86053984|gb|DR349741.1|DR349741
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|152035849|gb|BP863154.2|BP863154
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTAAGCTTGGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053897|gb|DR349654.1|DR349654
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053987|gb|DR349744.1|DR349744
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|125016060|gb|EL088329.1|EL088329
EST:     ATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
genomic: ATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
EST: gi|86053948|gb|DR349705.1|DR349705
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053923|gb|DR349680.1|DR349680
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053992|gb|DR349749.1|DR349749
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053966|gb|DR349723.1|DR349723
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053903|gb|DR349660.1|DR349660
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGSAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|152034625|gb|BP833134.2|BP833134
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053938|gb|DR349695.1|DR349695
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053905|gb|DR349662.1|DR349662
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|152033879|gb|BP818939.2|BP818939
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053975|gb|DR349732.1|DR349732
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053955|gb|DR349712.1|DR349712
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053953|gb|DR349710.1|DR349710
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053959|gb|DR349716.1|DR349716
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053960|gb|DR349717.1|DR349717
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|124832633|gb|EH917072.1|EH917072
EST:     ATCGCAGAGAGATCTGCAAATACCTTTTCAAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
genomic: ATCGCAGAGAGATCTGCAAATACCTTTTC-AAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
EST: gi|86053899|gb|DR349656.1|DR349656
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: gi|86053909|gb|DR349666.1|DR349666
EST:     ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG                         AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagtcatgctctctttcatttccttctattttcagctagtggaaccaggtttaagctagttacatttctctagggatcttcgaatctaagcttg

- - - - - - - - - - - - GAGATC