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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaagccattttttgggaatctggtgtgtgtgtgtgtgtgttttgtcttcaaggcttatgtgacggcttgggttctgtctcttaacag

Basic information

species Arabidopsis thaliana
transcript AT4G25680.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25680.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G24630.1 (Glycine max), 5'ss of exon 2
AGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaagccatt-ttttgggaatctggtgtgtgtgtgtgtgtgttttgtcttcaaggcttatgtgacggcttgggttctgtctcttaacag-----------
|| || || ||||||||     | |||||| || |||| ||||| |||||||||||||| |||| | |||||||  | |||||||| |||||  | |||||||||    |   | ||  | | || | | ||  | | ||   ||  |  | || | ||   | |  | |    |  ||     ||               
AGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgctactatgatat-tgcttttatgatgttcattgttaatgttttgctcaatgatgacctagtgatatatagggatgtatcatgta

upper sequence: AT4G25680.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G29860.1 (Glycine max), 5'ss of exon 2
AGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaa------gccattttttgggaatctggtgtgtgtg-tgt-----gtgtgttttgtcttcaaggcttatgtgacggctt---gggttctgtctcttaacag
|| || || ||||| ||     | |||||| || |||| ||||| ||||||||||| || |||| | |||||||  |||||||||| |||||  | |||||||||       | || ||     ||| | |  | | || |||     ||   |||| |  || | | |    |  |||  |   ||| | | ||   ||    
AGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgttactataatgttgcttttatgatgttcattgttatttttttgctcgatgatggcctagcggtatatagggatgtatcatgta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874751|gb|AU235582.1|AU235582
EST:     TCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAG                         GTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAG
genomic: TCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaagccat ... ctcttaacagGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAG
EST: gi|125158362|gb|EL186995.1|EL186995
EST:     TCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAG                         GTTGGGTTAATC
genomic: TCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaagccat ... ctcttaacagGTTGGGTTAATC
EST: gi|163973301|gb|ES019803.1|ES019803
EST:     TTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAG                         GTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGC
genomic: TTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaagccat ... ctcttaacagGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGC
EST: gi|124770594|gb|EH860724.1|EH860724
EST:     CACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAAGATCCCAG                         GTTGGGTTAATCGCTTTGCTAAT
genomic: CACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAA-GATCCCAGgtaaagccat ... ctcttaacagGTTGGGTTAATCGCTTTGCTAAT