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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGgtaaaaccattattgtgggaatcagggtttgtgtgtgtgtttatgttatgtgacggcttgggttctgtctcttaacag

Basic information

species Arabidopsis thaliana
transcript AT4G25660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G24630.1 (Glycine max), 5'ss of exon 2
AGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGgtaaaaccattattgtgggaatcagggtttgtgtgtgtgtttatgttatgtgacggcttgggttctg-tctcttaacag---------------------
|| || || ||||| ||     | |||||| ||||||||||||| |||||||||||||| |||| ||| |||||  | |||||||| |||||  | |||||||||    | | | ||  | |  |   |||  | | || |  |  |   | | |  |||     || |  | ||                         
AGTAGAGAGTGGCCTGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGACTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgctactatgatattgcttttatgatgttcattgttaatgttttgctcaatgatgacctagtgatatatagggatgtatcatgta

upper sequence: AT4G25660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G29860.1 (Glycine max), 5'ss of exon 2
AGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGgtaaaaccattattgtggga--atcagggtttgtgtgtg-tgtttat-gttatgtgacggcttgggttctgtctcttaacag------------------
|| || || ||||||||     | |||||| ||||||||||||| ||||||||||| || |||| ||| |||||  | |||||||| |||||  | |||||||||    | | | ||  |  || | | |   | | || |||| || ||||| |    ||| |      | ||      |                   
AGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgttactataatgttgcttttatgatgttcattgttatttttttgctcgatgatggcctagcggtatatagggatgtatcatgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164069104|gb|ES155705.1|ES155705
EST:     GCCTTGGTGTGCCAAAGATCCCAG                         GTTGGGTGAATTCGTTTTGCTCATGCTGGCGACACAG
genomic: GCCTTGGTGTGCCAAAGATCCCAGgtaaaaccat ... ctcttaacagGTTGGGTGAAT-CGTTTTGCTCATGCTGGCGACACAG
EST: gi|125264330|gb|EL278415.1|EL278415
EST:     TCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAG                         GGTTGGGTGAATCGTTT
genomic: TCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGgtaaaaccat ... ctcttaacagG-TTGGGTGAATCGTTT