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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaaccgtctgttggttcactccatattgacatttcttatagattctgatcttgtctcatcatatatatag

Basic information

species Arabidopsis thaliana
transcript AT4G25030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G31850.3 (Glycine max), 5'ss of exon 2
---CATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaaccgtctgttggt----tcactc-catattgacatttcttatagatt-------ctgatcttgt-----ctcatcatatatatag--------
   |||   |    | |     || ||  ||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| | ||| |||| || || ||||||||| | | ||  | | |    | | || ||| ||  | ||| || |||  |         | | |||      |    ||| | ||| |        
AGACATAAATGAGGATTC---TATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttattgagaatgat

upper sequence: AT4G25030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G35680.3 (Glycine max), 5'ss of exon 2
---CATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaaccgtctgttggttcactccatattgacatttcttatagattctgatcttgtctcatcatatatatag---------------------------
   |||   |    | |     || ||  |||| || ||||||||||||||||||||||| |||||| |||| |||| |||| | ||| |||| || || ||||||||| | | ||  |  ||| ||   ||  | |  ||| |  |  ||| |   ||      ||    | |   |                           
AGACATAAATGAGGACTC---TATGCTTAGATGTCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccat-agttgacataattctcat-tttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttactgagaatgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032141|gb|DR327894.1|DR327894
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032126|gb|DR327879.1|DR327879
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|301501095|gb|HO206635.1|HO206635
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032137|gb|DR327890.1|DR327890
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|301501844|gb|HO207384.1|HO207384
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032134|gb|DR327887.1|DR327887
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032148|gb|DR327901.1|DR327901
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|19875699|gb|AU236530.1|AU236530
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032125|gb|DR327878.1|DR327878
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032146|gb|DR327899.1|DR327899
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032149|gb|DR327902.1|DR327902
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032133|gb|DR327886.1|DR327886
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032144|gb|DR327897.1|DR327897
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032130|gb|DR327883.1|DR327883
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032150|gb|DR327903.1|DR327903
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|125320126|gb|EL334211.1|EL334211
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGA
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGA
EST: gi|86032147|gb|DR327900.1|DR327900
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032129|gb|DR327882.1|DR327882
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032124|gb|DR327877.1|DR327877
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032132|gb|DR327885.1|DR327885
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032136|gb|DR327889.1|DR327889
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GNAANAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032127|gb|DR327880.1|DR327880
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032142|gb|DR327895.1|DR327895
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|301501084|gb|HO206624.1|HO206624
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032145|gb|DR327898.1|DR327898
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGTTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
EST: gi|86032139|gb|DR327892.1|DR327892
EST:     ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCT                         GCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG
genomic: ATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaacc ... atatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACG