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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGACTATTCAGGGTATGGCCAATCATCAGGGAAGgtgagtaaccacagatcctaaagctctcttagttctgagattcaaatgttggtccatttacactgtgaacaactgaacataaatctccattttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G24760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 2
GTATGACTATTCAGGGTATGGCCAATCATCAGGGAAGgtgagtaaccacagatcctaaagctctcttagttctgagattcaaatgttggtccatttacactgtgaacaactgaacataaatctccattttgttgcag
 |||||||||||||| ||||| ||||||||||| |||||  |   |   || |  |   |  |  |   | ||  |      |  ||    |  | |  || ||   | || |   |    || | | |  || |||
ATATGACTATTCAGGATATGGACAATCATCAGGAAAGgtatg---ctgaagtttgttgtgagcagtgcatactacgt----gacattaacacgctgaagct-tggttagcttagtttttcccttc-tctgctttcag

upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 2
GTATGACTATTCAGGGTATGGCCAATCATCAGGGAAGgtgagtaaccacagatcctaaagctctcttagttctgagattca-aatgttggtccatttacactgtgaacaactgaacataaatctccattttgttgcag
||||||||||||||| ||||| ||||||||||| |||||   | | ||   ||| | ||| |     | |  |    |||| ||      |   | |  ||| ||    | ||           |||||||       
GTATGACTATTCAGGATATGGGCAATCATCAGGAAAGgta--tgatca--aatcttgaagttgaac-aatgttatttttcataacaaaactaagtgtctactttgc-tgagtgtttgcgctgtcccattttag-----