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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgctacaataaaccattttttttatagttgccaaaacatgatatatatctaatcttcaagagcctgagaattgcttttgtcttttgattacag

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86028451|gb|DR324204.1|DR324204
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGAT
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGAT
EST: gi|124910563|gb|EH984643.1|EH984643
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTA
EST: gi|86028467|gb|DR324220.1|DR324220
EST:     AGAAGAAAACAATTGGTGAAATGGMACAAGAGTTTCTCCAAGCGTTGCMA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|124891604|gb|EH970506.1|EH970506
EST:     GTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: GTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028448|gb|DR324201.1|DR324201
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|125204975|gb|EL219929.1|EL219929
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGAT
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGAT
EST: gi|125018788|gb|EL091057.1|EL091057
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTA
EST: gi|86028482|gb|DR324235.1|DR324235
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028462|gb|DR324215.1|DR324215
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028474|gb|DR324227.1|DR324227
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028454|gb|DR324207.1|DR324207
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028457|gb|DR324210.1|DR324210
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028453|gb|DR324206.1|DR324206
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|125247239|gb|EL261324.1|EL261324
EST:     AAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028472|gb|DR324225.1|DR324225
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028476|gb|DR324229.1|DR324229
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028478|gb|DR324231.1|DR324231
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028456|gb|DR324209.1|DR324209
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028477|gb|DR324230.1|DR324230
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTGTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|125146635|gb|EL181262.1|EL181262
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCA-                         TCTTTCTATTATTGATGGCAAAGCG
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTAT-GATGGCAAAGCG
EST: gi|86028464|gb|DR324217.1|DR324217
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTGTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028473|gb|DR324226.1|DR324226
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028465|gb|DR324218.1|DR324218
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028466|gb|DR324219.1|DR324219
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAA-GCGATCATGTCTAATGAAGAGTTTGATAA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAA
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028455|gb|DR324208.1|DR324208
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|124988133|gb|EL060540.1|EL060540
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGC
EST: gi|86072245|gb|DR368002.1|DR368002
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028461|gb|DR324214.1|DR324214
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028445|gb|DR324198.1|DR324198
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028468|gb|DR324221.1|DR324221
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028444|gb|DR324197.1|DR324197
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028447|gb|DR324200.1|DR324200
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028475|gb|DR324228.1|DR324228
EST:     AGAAGAGAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TSTTTCTATTATGATGGCAAAGCGATCATGTSTAATGAAGAGTTTGATAAS
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028470|gb|DR324223.1|DR324223
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATNGGCAAAGCGATCATGTCTAATGAAGAGTTTGGATA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGAT-GGCAAAGCGATCATGTCTAATGAAGAGTTTG-ATA
EST: gi|124734619|gb|EH826021.1|EH826021
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAA
EST: gi|86028458|gb|DR324211.1|DR324211
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATKYTCTAATGAAGAGTTTGATAA
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATG-TCTAATGAAGAGTTTGATAA
EST: gi|86028460|gb|DR324213.1|DR324213
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028452|gb|DR324205.1|DR324205
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028459|gb|DR324212.1|DR324212
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATG
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATG
EST: gi|86028469|gb|DR324222.1|DR324222
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028479|gb|DR324232.1|DR324232
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028483|gb|DR324236.1|DR324236
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|125041439|gb|EL113708.1|EL113708
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|86028480|gb|DR324233.1|DR324233
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
EST: gi|116424112|gb|EG466704.1|EG466704
EST:     AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAA                         TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC
genomic: AGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgcta ... ttgattacagTCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAAgtaaacgctacaataaaccattttttttatagttgccaaaacatgatatatatctaatcttcaagagcctgagaattgcttttgtcttttgattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA