1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGgtaaaattatcttcagctctttgtgttggttatatattattagtattctgagaaatgttcatatctttctcatcttggactattgttgtgctgtttttca...
species | Arabidopsis thaliana |
transcript | AT4G21810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGG ATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCGATACTEST: gi|125141485|gb|EL178986.1|EL178986
genomic: ATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGgtaaaattat ... tcttttgcagATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCGATACT
EST: CGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGG ATTTGGACTTTTTGTTCCATATGTTTTT-CTAGCTCGATACTGCAAACTGCEST: gi|125009280|gb|EL081549.1|EL081549
genomic: CGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGgtaaaattat ... tcttttgcagATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCGATACTGCAAACTGC
EST: CTTTATTTCCGAAAGATGG ATTTGGACTTTTTGTTTCCATATGTTTTTTCTTAGCTCGATACTGCAAACT
genomic: CTTTATTTCCGAAAGATGGgtaaaattat ... tcttttgcagATTTGGACTTTTTG-TTCCATATGTTTTTTC-TAGCTCGATACTGCAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGgtaaaattatcttcagctctttgtgttggttatatattattagtattctgagaaatgttcatatctttctcatcttggactattgttgtgctgtttttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttctc